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| Conditions to exclude low quality sequences |
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| Conditions to exclude low quality bisulfite sequences can be changed. These parameters can also be changed after data submission. | |
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Upper limit of unconverted CpHs number of unconverted CpHs (CpA, CpC and CpT) (parameter to exclude incomplete bisulfite conversion) |
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Lower limit of percent converted CpHs percent of "number of converted CpHs" / "number of CpHs" (parameter to exclude incomplete bisulfite conversion) |
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Upper limit of alignment mismatches number of alignment mismatches and gaps between genomic and bisulfite sequences (parameter to exclude low quality sequence read) |
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Lower limit of percent identity percent of alignment identity between genomic and bisulfite sequences (parameter to exclude raw quality sequence read) |