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QUMA: QUantification tool for Methylation Analysis
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You can easily align, visualize and quantify
bisulfite sequence data for CpG methylation analysis

 list  Overview: how to use QUMA space  list  Quick start space  list  Execute with sample sequence data space  list  Sample sequence files
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 list  Upload target genomic sequence (PCR target) file
(plain sequence, FASTA or GenBank format)
The genomic sequence must be an unconverted sequence between PCR primer pair (not necessary to convert "C" to "T").
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 list  Upload bisulfite sequence file
(multi-FASTA format file or zipped archive of sequence files)
Raw sequence data can be used. Removal of plasmid vector sequence is not necessary.
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 list  Upload QUMA restore file (.qma) to restore the analysis space   help
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    What's New
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  • Nov 12 2010
    • Performance of Fisher's exact test is improved
  • Oct 22 2010
    • Character-Based User Interface version is now available at the download section
  • Previous News
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    Supported browsers
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We support the following web browsers;
  • Firefox (Mac/Win)
  • Safari (Mac)
  • Opera (Mac/Win)
  • Internet Explorer(IE) 6.0 and higher (Win)  (IE 7 is not recommended because it has many bugs)
Many browsers such as IE 5.0 for Windows, Mozilla, and Netscape 6 and higher may work as well.
Some older browsers such as IE for Mac or Netscape 4 will not work.
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    Contact information
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  Yuichi Kumaki & Masaki Okano
  Laboratory for Mammalian Epigenetic Studies, Center for Developmental Biology, RIKEN
  2-2-3 Minatojima-Minamimachi, Chuo-ku, Kobe 650-0047, Japan
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spacer Laboratory for Mammalian Epigenetic Studies, Center for Developmental Biology, RIKEN
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If you have any questions/comments/requests etc., please feel free to contact  : 
quma@cdb.riken.jp
Copyright© 2008-2010 RIKEN Center for Developmental Biology All rights reserved.
Last updated at Fri Nov 12 23:58:32 JST 2010 spacer QUMA (QUantification tool for Methylation Analysis) top