LOCUS NT_111909 453 bp DNA linear CON 21-JUN-2007 DEFINITION Mus musculus chromosome X genomic contig, strain C57BL/6J. ACCESSION NT_111909 REGION: complement(2446765..2447217) VERSION NT_111909.2 GI:83000855 KEYWORDS . SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus. REFERENCE 1 (bases 1 to 453) AUTHORS Waterston,R.H., Lindblad-Toh,K., Birney,E., Rogers,J., Abril,J.F., Agarwal,P., Agarwala,R., Ainscough,R., Alexandersson,M., An,P., Antonarakis,S.E., Attwood,J., Baertsch,R., Bailey,J., Barlow,K., Beck,S., Berry,E., Birren,B., Bloom,T., Bork,P., Botcherby,M., Bray,N., Brent,M.R., Brown,D.G., Brown,S.D., Bult,C., Burton,J., Butler,J., Campbell,R.D., Carninci,P., Cawley,S., Chiaromonte,F., Chinwalla,A.T., Church,D.M., Clamp,M., Clee,C., Collins,F.S., Cook,L.L., Copley,R.R., Coulson,A., Couronne,O., Cuff,J., Curwen,V., Cutts,T., Daly,M., David,R., Davies,J., Delehaunty,K.D., Deri,J., Dermitzakis,E.T., Dewey,C., Dickens,N.J., Diekhans,M., Dodge,S., Dubchak,I., Dunn,D.M., Eddy,S.R., Elnitski,L., Emes,R.D., Eswara,P., Eyras,E., Felsenfeld,A., Fewell,G.A., Flicek,P., Foley,K., Frankel,W.N., Fulton,L.A., Fulton,R.S., Furey,T.S., Gage,D., Gibbs,R.A., Glusman,G., Gnerre,S., Goldman,N., Goodstadt,L., Grafham,D., Graves,T.A., Green,E.D., Gregory,S., Guigo,R., Guyer,M., Hardison,R.C., Haussler,D., Hayashizaki,Y., Hillier,L.W., Hinrichs,A., Hlavina,W., Holzer,T., Hsu,F., Hua,A., Hubbard,T., Hunt,A., Jackson,I., Jaffe,D.B., Johnson,L.S., Jones,M., Jones,T.A., Joy,A., Kamal,M., Karlsson,E.K., Karolchik,D., Kasprzyk,A., Kawai,J., Keibler,E., Kells,C., Kent,W.J., Kirby,A., Kolbe,D.L., Korf,I., Kucherlapati,R.S., Kulbokas,E.J., Kulp,D., Landers,T., Leger,J.P., Leonard,S., Letunic,I., Levine,R., Li,J., Li,M., Lloyd,C., Lucas,S., Ma,B., Maglott,D.R., Mardis,E.R., Matthews,L., Mauceli,E., Mayer,J.H., McCarthy,M., McCombie,W.R., McLaren,S., McLay,K., McPherson,J.D., Meldrim,J., Meredith,B., Mesirov,J.P., Miller,W., Miner,T.L., Mongin,E., Montgomery,K.T., Morgan,M., Mott,R., Mullikin,J.C., Muzny,D.M., Nash,W.E., Nelson,J.O., Nhan,M.N., Nicol,R., Ning,Z., Nusbaum,C., O'Connor,M.J., Okazaki,Y., Oliver,K., Overton-Larty,E., Pachter,L., Parra,G., Pepin,K.H., Peterson,J., Pevzner,P., Plumb,R., Pohl,C.S., Poliakov,A., Ponce,T.C., Ponting,C.P., Potter,S., Quail,M., Reymond,A., Roe,B.A., Roskin,K.M., Rubin,E.M., Rust,A.G., Santos,R., Sapojnikov,V., Schultz,B., Schultz,J., Schwartz,M.S., Schwartz,S., Scott,C., Seaman,S., Searle,S., Sharpe,T., Sheridan,A., Shownkeen,R., Sims,S., Singer,J.B., Slater,G., Smit,A., Smith,D.R., Spencer,B., Stabenau,A., Stange-Thomann,N., Sugnet,C., Suyama,M., Tesler,G., Thompson,J., Torrents,D., Trevaskis,E., Tromp,J., Ucla,C., Ureta-Vidal,A., Vinson,J.P., Von Niederhausern,A.C., Wade,C.M., Wall,M., Weber,R.J., Weiss,R.B., Wendl,M.C., West,A.P., Wetterstrand,K., Wheeler,R., Whelan,S., Wierzbowski,J., Willey,D., Williams,S., Wilson,R.K., Winter,E., Worley,K.C., Wyman,D., Yang,S., Yang,S.P., Zdobnov,E.M., Zody,M.C. and Lander,E.S. TITLE Initial sequencing and comparative analysis of the mouse genome JOURNAL Nature 420 (6915), 520-562 (2002) PUBMED 12466850 REFERENCE 2 (sites) AUTHORS Lowe,T.M. and Eddy,S.R. TITLE tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence JOURNAL Nucleic Acids Res. 25 (5), 955-964 (1997) PUBMED 9023104 REMARK This is the methods paper for tRNAscan-SE. COMMENT GENOME ANNOTATION REFSEQ: Features on this sequence have been produced for build 37 version 1 of the NCBI's genome annotation [see documentation]. On or before Jan 11, 2006 this sequence version replaced gi:63740850, gi:63741204. The DNA sequence is part of the largely finished reference sequence (C57BL/6J) that contains small amounts of WGS and HTGS Draft sequence. This assembly was performed by NCBI in consultation with the Mouse Genome Sequencing Consortium. Name: MmX_110779_37. FEATURES Location/Qualifiers source 1..453 /organism="Mus musculus" /mol_type="genomic DNA" /strain="C57BL/6J" /db_xref="taxon:10090" /chromosome="X" ORIGIN 1 caagagagct gagcttggag aaactcgatc ttccagttct acgtagctcg aggcgggaag 61 gcatcacacc ataaatgcgc atgcacacgc gcaccttgaa ggctgggctt ttctcagcga 121 gctcagaggc tctcgtgaga tttcatcctt agtctcgctc ttctgcccct tcccccacaa 181 gacacaggtt ttccctccga aaaaccacac ccggaagcgt gtcactcaat ccccacaaca 241 gcgtgcgtgc cctttgcaat ctgcgcagtc cccaacatca cacatatgca cattctagcc 301 ctccaatctc tagggttgtg tgaatgtgcc tccccaccga tccgatccct aagaacagaa 361 gacctctaga caatcgaaac tgcagcatca aaagcatcac agcacataca atcacaaact 421 ttatgtgtct cctagcctgt ccaatccccc act //